Workshop on NextGen Sequencing-based Whole Genome Sequencing, Assembly and Annotation        

Date: August 20-22, 2018

Timings: 9:00 AM-5:30 PM

Venue: Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University)


Schedule


Workshop Program

Day 1:

Tutorial Lectures

  • NextGen sequencing platforms
  • Sequencing data formats
  • Quality control of raw data
  • Day 2:

    Tutorial Lectures

  • Mapping algorithms and tools for whole genome and exome data
  • Next Generation sequencing and its applications
  • Day 3:

    Tutorial Lectures

  • Proteogenomics
  • Introduction to R and genome analysis packages
  • Hands on training

  • Linux environment and data formats
  • Public data and annotation resources
  • Hands on training

  • Quality filteration and visualization tools
  • Genome alignment and analysis tools
  • Hands on training

  • Proteogenomic analysis
  • Differential expression analysis