Software developed by CSBMM team

PTM-Pro: This program will fetch high confident PTM sites at peptide and protein level based on user-defined ptmRS probability cut-off. A summary of the number of PTM sites that qualify the said cut-off will be generated. Also, a PTM window consisting of 7 amino acids upstream and downstream of the PTM site will be provided. This window can be used for motif enrichment or to identify conserved motifs. Please read the following steps to prepare your input file and set up the analysis. sample file. Use: Database of RefSeq75 for executing sample file. (To save, "right click" and opt for "save link as").

Weblink: http://ptm-pro.inhouseprotocols.com

Github: https://github.com/arunhpatil/PTM-Pro