CSBMM
Publications
     
    Total number of publications - 91

       
    2019 (Number of publications - 20)

     
     

  • Datta, K.K., Patil, S., Patel, K., Babu, N., Raja, R., Nanjappa, V., Mangalaparthi, K. K., Dhaka, B., Rajagopalan, P., Deolankar, S. C., Kannan, R., Kumar, P., Prasad, T. S. K., Mathur, P. P., Kumari, A., Manoharan, M., Karunakaran, C., Murugan, S., Sidransky, D., Gupta, R., Gupta, R., Khanna-Gupta, A., Chatterjee, A., Gowda, H. (2019). Chronic exposure to chewing tobacco induces metabolic reprogramming and cancer stem cell-like properties in esophageal epithelial cells. Cells. In press.
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  • Kulkarni, S., Abdulla, R., Jose, M., Adyanthaya, S., Rex, D.A.B., Patil, A. H., Pinto, S.M., Subbannayya, Y. Data-driven analysis identifies laminin-integrin-mediated signaling pathway as a determinant for cell differentiation in oral squamous cell carcinoma (2019). Indian Journal of Pathology and Microbiology. In press.
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  • Deolankar, S. C., Patil, A. H., Koyangana, S. G., Subbannayya, Y., Prasad, T. S. K. and Modi, P. K. (2019). Dissecting Alzheimer’s disease molecular substrates by proteomics and discovery of novel post-translational modifications (PTMs). OMICS: A Journal of Integrative Biology. 23, 350-361. [PubMed]
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  • Subbannayya, Y., Pinto, S. M., Bösl, K., Prasad, T. S. K. and Kandasamy, R. K. (2019). Dynamics of dual specificity phosphatases and their interplay with protein kinases in immune signaling. International Journal of Molecular Sciences. 27, 20. [PubMed]
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  • Agrawal, A., Ravikumar, R., Varun, C. N., Kumar, M., Chatterjee, O., Advani, J., Gopalakrishnan, L., Nagaraj, S, Mohanty, V., Patil, A. H., Sreeramulu, B., Malik, A., Pinto, S. M., and Prasad, T. S. K. (2019). Global proteome profiling reveals drug-resistant traits in Elizabethkingia meningoseptica: an opportunistic nosocomial pathogen. OMICS: A Journal of Integrative Biology. 23, 318-326. [PubMed]
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  • Mohanty, A. K., Dey, G., Kumar, M., Sreenivasamurthy, S. K., Garg, S., Prasad, T. S. K. and Kumar, A. (2019). Proteome data of female Anopheles stephensi antennae. Data in Brief. 8, 24. [PubMed]
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  • Patil, K., Yelamanchi, S., Kumar, M., Hinduja, I., Prasad, T. S. K., Gowda, H. and Mukherjee, S. (2019). Quantitative mass spectrometric analysis to unravel glycoproteomic signature of follicular fluid in women with polycystic ovary syndrome. PLoS ONE. 4, 14. [PubMed]
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  • Sinha, S., Ray, A., Abhilash, L., Kumar, M., Sreenivasamurthy, S. K., Prasad, T. S. K. and Inamdar, M. S. (2019). Proteomics of Asrij perturbation in Drosophila lymph glands for identification of new regulators of hematopoiesis. Molecular & Cellular Proteomics. 8, 1171-1182. [PubMed]
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  • Kalal, B. S., Pai, V. R., Behera, S. K., and Somashekarappa, H. M. (2019). HDAC2 Inhibitor Valproic Acid Increases Radiation Sensitivity of Drug-Resistant Melanoma Cells. Medical Sciences 22, 7.[PubMed]
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  • Subba, P., Kemmai, C. N. and Prasad, T. S. K. (2019). Plant proteome databases and bioinformatic tools: An expert review and comparative insights. OMICS A Journal of Integrative Biology. 23, 190-206. [PubMed]
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  • Advani, J., Verma, R., Chatterjee, O., Pachouri, P. K., Upadhyay, P., Singh, R., Yadav, J., Naaz, F., Ravikumar, R., Buggi, S., Suar, M., Gupta U. D., Pandey, A., Chauhan, D. S., Tripathy, S. P., Gowda, H. and Prasad, T. S. K. (2019). Whole genome sequencing of Mycobacterium tuberculosis clinical isolates from India reveals genetic heterogeneity and region specific variations that might affect drug susceptibility. Frontiers in Microbiology. In Press
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  • Menon, D., Singh, K., Pinto, S. M., Nandy, A., Jaisinghani, N., Kutum, R., Dash, D., Prasad, T. S. K. and Gandotra, S. (2019). Quantitative lipid droplet proteomics reveals Mycobacterium tuberculosis induced alterations in macrophage response to infection. ACS Infectious Diseases. [PubMed]
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  • Pinto, S. M., Subbannayya, Y. and Prasad, T. S. K. (2019). “Functional Proteomic Analysis to Characterize Signaling Crosstalk” In: Functional Proteomics: Methods and Protocols. X. Wang and M. Kuruc Editors. New York, NY, Springer New York: 197-224. [PubMed]

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  • Subbannayya, T., Leal-Rojas, P., Zhavoronkov, A., Ozerov, I. V., Korzinkin, M., Babu, N., Radhakrishnan, A., Chavan, S., Raja, R., Pinto, S. M., Patil, A. H., Barbhuiya, M. A., Kumar, P., Guerrero-Preston, R., Navani, S., Tiwari, P. K., Kumar, R. V., Prasad, T. S. K., Roa, J. C., Pandey, A., Sidransky, D., Gowda, H., Izumchenko, E. and Chatterjee, A. (2019). PIM1 kinase promotes gallbladder cancer cell proliferation via inhibition of proline-rich Akt substrate of 40 kDa (PRAS40). Journal of Cell Communication and Signaling. In press.

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  • Advani, J., Verma, R., Chatterjee, O., Rex, D. A. B., Najar, M. A., Ravishankara, N., Suresh, S., Pachori, P. K., Gupta, U. D., Pinto, S. M., Chauhan, D. S., Tripathy, S. P., Gowda, H. and Prasad, T. S. K. (2019). Rise of clinical microbial proteogenomics: A multi-omics approach to non-tuberculous mycobacterium – the case of Mycobacterium abscessus UC22. OMICS: A Journal of Integrative Biology. 23, 1-16. [PubMed]

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  • Kumar, M., Mohanty, A. K., Dey, G., Sreenivasamurthy, S. K., Kumar, A., and Prasad, T. S. K. (2019). Dataset on fat body proteome of Anopheles stepensi Liston. Data in Brief. 22,1068-1073. [PubMed]

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  • Barua, P., Lande N. V, Subba, P., Gayen, D., Pinto, S., Prasad, T. S. K., Chakraborty, S., Chakraborty, N. (2019). Dehydration-responsive nuclear proteome landscape of chickpea (Cicer arietinum L.) reveals phosphorylation-mediated regulation of stress response. Plant, Cell & Environment. [PubMed]

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  • Gowthami, N. B., Sunitha, B., Kumar, M., Prasad, T. S. K., Gayathri, N., Padmanabhan, B., and Bharath, M. M. S. (2019). Mapping the protein phosphorylation sites in human mitochondrial complex I (NADH: ubiquinone oxidoreductase): A bioinformatics study with implications for brain aging and neurodegeneration. Journal of Chemical Neuroanatomy. S0891-0618(17)30150-3. [PubMed]

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  • Mohanty, V., Subbannayya, Y., Najar, M. A., Pinto, S. M., Kasaragod, S., Karuppiah, H., Sreeramulu, B., Singh, K. K., Dalal, S., Manikkoth, S., Arunachalam, C., Prasad, T. S. K. and Murthy, K. R. (2019). Proteomics and visual health research: Proteome of the human sclera using high-resolution mass spectrometry. OMICS: A Journal of Integrative Biology. [PubMed]

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  • Bhat, S. A., Gurtoo. S., Deolankar, S. C., Fazili, K. M., Advani, J., Shetty, R., Prasad, T. S. K., Andrabi, S., Subbannayya, Y. (2019). A network map of netrin receptor UNC5B-mediated signaling. Journal of Cell Communication and Signaling. [PubMed]

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    2018 (Number of publications - 32)

     
     
  • Nanjappa, V., Raja, R., Radhakrishnan, A., Jain, A.P., Datta, K.K., Puttamallesh, V. N., Solanki, H, S., Chavan, S., Patil, A., Renuse, S., Jain, A., Mathew, D., Thakur, R., Guerrero-Preston, R., Nair, B., Routray, S., Mohanty, N., Gowda, K.B.L., Jadav, R., Ghosal, S., Kumar, R.V., Ramesha, C., Raghu, V.C., Mathur, P.P., Prasad, T.S.K., Califano, J.A., Sidransky, D., Pal, A., Ganesh, M.S., Ray, J.G., Pandey, A., Gowda, H., and Chatterjee, A. (2018). Testican 1 (SPOCK1) and protein tyrosine phosphatase, receptor type S (PTPRS) show significant increase in saliva of tobacco users with oral cancer. Translational Research in Oral Oncology. [PubMed]

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  • Yelamanchi, S. D., Tyagi, A., Mohanty, V., Dutta, P., Korbonits, M., Chavan, S., Advani, J., Madugundu, A. K., Dey, G., Datta, K. K., Rajyalakshmi, M., Sahasrabuddhe, N. A., Chaturvedi, A., Kumar, A., Das, A. A., Ghosh, D., Jogdand, G. M., Nair, H. H., Saini, K., Panchal, M., Sarvaiya, M. A., Mohanraj, S. S., Sengupta, N., Saxena, P, Subramani, P. A., Kumar, P., Akkali, R., Reshma S. V., Santhosh, R. S., Rastogi, S., Kumar, S., Ghosh, S. K., Irlapati, V. K., Srinivasan, A., Radotra, B. D., Mathur, P. P., Wong, G. W., Satishchandra, P., Chatterjee, A., Gowda, H., Bhansali, A., Pandey, A., Shankar, S. K., Anita Mahadevan, A. and Prasad, T. S. K. (2018). Proteomic analysis of the human anterior pituitary gland. OMICS: A Journal of Integrative Biology. 22, 759-769. [PubMed]

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  • Advani, J., Sharma, K., Verma, R., Chatterjee, O., Solanki, H. S., Sharma, A., Varma, S., Modi, M., Ray, P. Sharma, M., Dhillion, M. S., Pandey, A., Gowda, H., Prasad, T. S. K. (2018). Data on whole genome sequencing of extrapulmonary tuberculosis clinical isolates from India. Data in Brief. 20, 617-622. [PbuMed]

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  • Sreenivasamurthy, S. K., Dey, G., Kumar, M., Mohanty, A. K., Kumar, A., and Prasad, T. S. K. (2018). Quantitative proteome of midgut, Malpighian tubules, ovaries and fat body from sugar-fed adult An. stephensi mosquitoes. Data in Brief. 20, 1861-1866. [PubMed]

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  • Dey, G., Mohanty, A. K., Kumar, M., Sreenivasamurthy, S. K., Patil, A. H., Prasad, T. S. K. and Kumar, A. (2018). Proteome data of Anopheles stephensi ovary using high-resolution mass spectrometry. Data in Brief. 20, 723-731. [PubMed]

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  • Karthikkeyan, G., Subbannayya, Y., Najar, M. A., Mohanty, V., Pinto, S. M., Arunachalam, C., Prasad, T. S. K., and Murthy, K. R. (2018). Human optic nerve - an enhanced proteomic expression profile. OMICS: A Journal of Integrative Biology. 22, 642-652. [PubMed]

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  • Sahu, A., Gopalakrishnan, L., Gaur, N., Chatterjee, O., Mol, P., Modi, P. K., Dagamajalu, S., Advani, J., Jain, S. and Prasad, T. S. K. (2018). The 5-Hydroxytryptamine signaling map: an overview of the serotonin-serotonin receptor-mediated signaling network. Journal of Cell Communication and Signaling. [PubMed]

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  • Bhat, F. A., Advani, J., Khan, A. A., Mohan, S., Pal, A., Gowda, H., Chakrabarti, P., Prasad, T. S. K. and Chatterjee, A. (2018). A network map of thrombopoietin signaling. Journal of Cell Communication and Signaling. [PubMed]

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  • Patil, A. H., Datta, K. K., Behera, S. K., Kasaragod, S., Pinto, S. M., Koyangana, S. G., Mathur, P. P., Gowda, H., Pandey, A. and Prasad T. S. K. (2018). Dissecting Candida pathobiology: Post-translational modifications on the Candida tropicalis proteome. OMICS: A Journal of Integrative Biology. [PubMed]

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  • Subbannayya, Y., Karthikkeyan, G., Pinto, S. M., Kapoor, S., Tyagi, A., Pervaje, S. K., Pervaje, R. and Prasad, T. S. K. (2018). Global metabolite profiling and network pharmacology of Triphala identifies neuromodulatory receptor proteins as potential targets. Journal of Proteins and Proteomics. [PubMed]

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  • Subba, S., Pinto, S. M., Kasaragod, S., Chatterjee, O., Najar, A. M. and Prasad, T. S. K. (2018). Nuclear proteome of an orphan legume - Cajanus cajan L. Journal of Proteins and Proteomics. [PubMed]

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  • Khan, A. A., Mangalaparthi, K. K., Advani, J., Prasad, T. S. K., Gowda, H., Jain, D. and Chatterjee, A. (2018). Data from quantitative proteomic analysis of lung adenocarcinoma and squamous cell carcinoma primary tissues using high-resolution mass spectrometry. Data in Brief. [PubMed]

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  • Selvan, L. D. N., Danda, R., Madugundu, A. K., Puttamallesh, V. N., Sathe, G. J., Krishnan, U. M., Khetan, V., Rishi, P., Prasad, T. S. K., Pandey, A., Krishnakumar, S., Gowda, H. and Elchuri, A. (2018). Phosphoproteomics of Retinoblastoma: A pilot study identifies aberrant kinases. Molecules. [PubMed]

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  • Pinto, S. M., Verma, R, Advani, J., Chatterjee, O., Patil, A. H., Kapoor, S., Subbannayya, Y., Raja, R., Gandotra, S. and Prasad, T. S. K. (2018). Integrated multi-omic analysis of Mycobacterium tuberculosis H37Ra redefines virulence attributes. Frontiers in Microbiology. [PubMed]

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  • Babu, N., Mohan, S., Nanjappaa, V., Chavan, S., Advani, J., Khan, A. A., Renuse, S., Radhakrishnan, A., Prasad, T. S. K., Kumar, R. V., Ray, J. G., Biswas, M., Thyagarajan, S., Califano, J. A., Sidransky, D., Gowda, H. and Chatterjee, A. (2018). Identification of potential biomarkers of head and neck squamous cell carcinoma using iTRAQ based quantitative proteomic approach. Data in Brief. [PubMed]

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  • Rajagopalan, P., Patel, K., Jain, A. P., Nanjappa, V., Datta, K. K., Subbannayya, T., Mangalaparthi, K. K., Kumari, A., Manoharan, M., Karunakaran, C., Murugan, S., Nair, B., Prasad, T. S. K., Mathur, P. P., Gupta, R., Gupta, R., Khanna-Gupta, A., Califano, J. A., Sidransky, D., Gowda, H. and Chatterjee, A. (2018). Molecular alterations associated with chronic exposure to cigarette smoke and chewing tobacco in normal oral keratinocytes. Cancer Biology & Therapy. [PubMed]

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  • Dey, G., Mohanty, A. K., Kumar, M., Sreenivasamurthy S. K., Kumar, A. and Prasad, T. S. K. (2018). Proteome data of Anopheles stephensi hemolymph using high resolution mass spectrometry. Data in Brief. 18, 1441-1447. [PubMed]

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  • Dhandapani, G., Sikha, T., Pinto, S. M., Kumar, K. M., Patel, K., Kumar, M., Kumar, V., Tennyson, J., Satheeshkumar, P. K., Gowda, H., Prasad, T. S. K. and Madanan, M. G. (2018). Proteomic approach and expression analysis revealed the differential expression of predicted leptospiral proteases capable of ECM degradation. BBA - Proteins and Proteomics. 1866, 712-721. [PubMed]

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  • Pinto, S. M., Subbannayya, Y., Rex, D. A. B., Raju, R., Chatterjee, O., Advani, J., Radhakrishnan, A., Prasad, T. S. K., Wani, M. R. and Pandey, A. (2018). A network map of IL-33 signaling pathway. Journal of Cell Communication and Signaling. [PubMed]

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  • Bhat, M. Y., Advani, J., Rajagopalan, P., Patel, K., Nanjappa, V., Solanki, H. S., Patil, A. H., Bhat, F. A., Mathur, P. P., Nair, B., Prasad, T. S. K., Califano, J. A., Sidransky, D., Gowda, H. and Chatterjee A. (2018). Cigarette smoke and chewing tobacco alter expression of different sets of miRNAs in oral keratinocytes. Scientific Reports. 8, 7040. [PubMed]

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  • Bannerjee, D., Kumar, M., Prasad, T. S. K., Natarajan, A., Christopher, R., Bindu, P. S., Gayathri, N., Nalini, A., and Bharath, M. M. S. (2018). Mitochondrial dysfunction in human skeletal muscle biopsies of lipid storage disorder. Journal of Neurochemistry. 145, 323-341. [PubMed]

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  • Kumar, M., Varun, C. N., Dey, G., Ravikumar, R., Mahadevan, A., Shankar, S. K. and Prasad, T. S. K. (2018). Identification of host-response in cerebral malaria patients using quantitative proteomic analysis. Proteomics - Clinical Applications. [PubMed]

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  • Babu, N., Advani, J., Solanki, H. S., Patel, K., Jain, A. P., Khan, A. A., Radhakrishnan, A., Sahasrabuddhe, N. A., Mathur, P. P., Nair, B., Prasad, T. S. K., Chang, X., Sidransky, D., Gowda, H. and Chatterjee, A. (2018). miRNA and proteomic dysregulation in non-small cell lung cancer in response to cigarette smoke. MicroRNA. 7, 38-53. [PubMed]

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  • Mahesh, H. B., Subba, P., Advani, J., Shirke, M. D., Loganathan, R. M., Chandana, S., Shilpa, S., Chatterjee, O., Pinto, S. M., Prasad, T. S. K. and Gowda, M. (2018). Multi-omics driven assembly and annotation of the sandalwood (Santalum album) genome. Plant Physiology. 176, 2772-2788. [PubMed]

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  • Solanki, H. S., Raja, R., Zhavoronkov, A., Ozerov. I. V., Artemov, A. V., Advani, J., Radhakrishnan, A., Babu, N., Puttamallesh, V. N., Syed, N., Nanjappa, V., Subbannayya. T., Sahasrabuddhe, N. A., Patil, A. H., Prasad, T. S. K., Daria. G., Chang, X., Sathyendran, R., Mathur, P. P., Rangarajan, A., Sidransky, D., Pandey, A., Evgeny, I., Gowda, H. and Chatterjee, A. (2018). Targeting Focal Adhesion Kinase overcomes erlotinib resistance in smoke induced lung cancer by altering phosphorylation of Epidermal Growth Factor Receptor. Oncoscience. 5, 21-38. [PubMed]

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  • Khan, A. A., Advani, J., Patel, K., Nanjappa, V., Datta, K. K., Solanki, H. S., Kumar, P., Mathur, P. P., Nair, B. P., Prasad, T. S. K., Chatterjee, A and Gowda, H. (2018). Chronic exposure of cigarette smoke and chewing tobacco alters expression of microRNAs in esophageal epithelial cells. MicroRNA. 7, 28-37. [PubMed]

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  • Rajagopalan, P., Nanjappa, V., Patel, K., Jain, A. K., Mangalaparthi, K. K., Patil, A. H., Nair, B., Mathur, P. P., Prasad, T. S. K., Califano, J. A., Sidransky, D., Gowda, H. and Chatterjee, A. (2018). Role of protein kinase N2 (PKN2) in cigarette smoke-mediated oncogenic transformation of oral cells. Journal of Cell Communication and Signaling. [PubMed]

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  • Mol, P., Kannegundla, U., Dey, G., Gopalakrishnan, L., Dammalli, M., Kumar, M., Patil, A., Basavaraju, M., Rao, A., Ramesha, K. P. and Prasad, T. S. K. (2018). Bovine Milk Comparative Proteome Analysis from Early, Mid and Late Lactation in the Cattle Breed, Malnad Gidda (​​Bos indicus​). OMICS: A Journal of Integrative Biology​. ​22, 223-235. [PubMed]

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  • Dammalli, M., Dey, G., Kumar, M., Madugundu, A. K., Gopalakrishnan, L., Byachapur, G. S., Mahadevan, A., Shankar S. K. and Prasad, T. S. K. (2018). Proteomics of the human olfactory tract. OMICS: A Journal of Integrative Biology. 22, 77-87. [PubMed]

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  • Nadella, V., Mohanty, A., Sharma, L., Yellaboina, S., Mollenkopf, H. J., Mazumdar, V. B., Palaparthi, R., Mylavarapu, M. B., Maurya, R., Kurukuti, S., Rudel, T. and Prakash, H. (2018). Inhibitors of Apoptosis Protein Antagonists (Smac Mimetic Compounds) Control Polarization of Macrophages during Microbial Challenge and Sterile Inflammatory Responses. Frontiers in Immunology. 8, 1792. [PubMed]

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  • Parvati, S. A. P. V., Miryala, S. K., Rana, A., Kurukuti, S., Akhter, Y. and Yellaboina, S. (2018). System-wide coordinates of higher order functions in host-pathogen environment upon Mycobacterium tuberculosis infection. Scientific Reports. 8, 5079. [PubMed]

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    2017 (Number of publications - 20)

     
     
  • Advani, J., Subbannayya, Y., Gowda H. and Chatterjee, A. (2017). Bioinformatics advances to accelerate omics innovations and applications in the postgenomic era. OMICS: A Journal of Integrative Biology. 12, 750. [PubMed]

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  • Nanjappa, V., Sathe, G.J., Jain, A. P., Rajagopalan, P., Raja, R, Subbannayya, T., Patil, A. H., Kumar, P., Prasad, T. S. K., Mathur, P. P., Sidra nsky, D., Gowda, H. and Chatterjee, A. (2017). Investigation of curcumin mediated signaling pathways in head and neck squamous cell carcinoma. Translational Research in Oral Oncology. [PubMed]

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  • Solanki, H. S., Babu, N., Jain, A. P., Bhat, M. Y., Puttamallesh, V. N., Advani, J., Raja, R., Mangalaparthi, K. K., Kumar, M. M., Prasad, T. S. K., Mathur, P. P., Sidransky, D., Gowda, H. and Chatterjee, A. (2017). Cigarette smoke induces mitochondrial metabolic reprogramming in lung cells. Mitochondrion. S1567-7249, 30221-0. [PubMed]

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  • Mir, S. A., Renuse, S., Sathe, G. J., Khan, A. A., Patil, A. H., Nanjappa, V., Bhat, F. A., Prasad, T. S. K., Giri, A. K., Chatterjee, A. and Gowda, H. (2017). Altered signaling associated with chronic arsenic exposure in human skin keratinocytes. OMICS: A Journal of Integrative Biology. 11, 11-12. [PubMed]

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  • McCall, M. N., Kim. M., Adil, M., Patil, A. H., Lu, Y., Mitchell, C. J., Leal-Rojas, P., Xu, J., Kumar, M., Dawson, V. L., Dawson, T. M., Baras, A. S., Rosenberg, A. Z., Arking, D.E., Burns, K. H., Pandey, A. and Halushka, M. K. (2017). Towards the human cellular microRNAome. Genome Research. 27, 1769-1781. [PubMed]

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  • Kumar, M., Mohanty, A. K., Sreenivasamurthy, S. K., Dey, G., Advani, J., Pinto, S. M., Kumar, A. and Prasad, T. S. K. (2017). Response to blood meal in the fat body of Anopheles stephensi using quantitative proteomics: Towards new vector control strategies against malaria. OMICS: A Journal of Integrative Biology. 21, 520-530. [PubMed]

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  • Dammalli, M., Dey, G., Madugundu, A. K., Kumar, M., Rodrigues, B., Gowda, H., Byachapur, G. S., Mahadevan, A., Shankar S. K., Prasad, T. S. K. (2017). Proteomic analysis of the human olfactory bulb. OMICS: A Journal of Integrative Biology. 21, 440-453. [PubMed]

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  • Solanki, H. S., Advani, J., Khan, A. A., Radhakrishnan, A., Sahasrabuddhe, N. A., Pinto, S. M., Chang, X., Prasad, T. S. K., Mathur, P. P., Sidransky, D., Gowda, H. and Chatterjee, A. (2017). Chronic cigarette smoke mediated global changes in lung mucoepidermoid cells: A phosphoproteomic analysis. OMICS: A Journal of Integrative Biology. 21, 474-487. [PubMed]

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  • Lande, N. V., Subba, P., Barua, P., Gayen, D., Prasad T. S. K., Chakraborty, S. and Chakraborty, N. (2017). Dissecting the chloroplast proteome of chickpea (Cicer arietinum L.) provides new insights into classical and non-classical functions. Journal of Proteomics. 8, 11-20. [PubMed]

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  • Sreenivasamurthy, S. K., Madugundu, A. K., Patil, A. H., Dey, G., Mohanty, A. K., Kumar, M., Patel, K., Wang, C., Kumar, A., Pandey, A. and Prasad, T. S. K. (2017). Mosquito-borne diseases and Omics: Tissue-restricted expression and alternative splicing revealed by transcriptome profiling of Anopheles stephensi. OMICS: A Journal of Integrative Biology. 21, 488-497. [PubMed]

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  • Sharma, K., Verma, R., Advani, J., Chatterjee, O., Solanki, H. S., Sharma, A., Varma, S., Modi, M., Ray, P., Mukherjee, K. K., Sharma, M., Dhillon, M. S., Suar, M., Chatterjee, A., Pandey, A., Prasad, T. S. K.* and Gowda, H.* (2017). Whole genome sequencing of Mycobacterium tuberculosis isolates from extrapulmonary sites. OMICS: A Journal of Integrative Biology. 21, 413-425. [PubMed]

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  • Dhawan, R., Mohanty, A. K., Kumar, M., Dey, G., Advani, J., Prasad, T. S. K. and Kumar, A. (2017). Data from salivary gland proteome analysis of female Aedes aegypti Linn. Data in Brief. 13, 274-277. [PubMed]

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  • Advani, J.#, Subbannayya, Y.#, Patel, K., Khan, A. A., Patil, A. H., Jain, A. P., Solanki, H. S., Radhakrishnan, A., Pinto, S. M., Sahasrabuddhe, N. A., Thomas, J. K., Mathur, P. P., Nair, B., Chang, X., Prasad, T. S. K., Sidransky, D., Gowda H., Chatterjee, A. (2017). Long term cigarette smoke exposure and changes in microRNA expression and proteome in non-small cell lung cancer. OMICS: A Journal of Integrative Biology. 7, 390-403. [PubMed] (# These authors contributed equally to the manuscript)

  •    
  • Kumar, S., Kumar, M., Ekka, R., Dvorin, J. D., Paul, A. S., Madugundu, A. K., Gilberger, T., Gowda, H., Duraisingh, M. T., Prasad, T. S. K. and Sharma, P. (2017). PfCDPK1 mediated signaling in erythrocytic stages of Plasmodium falciparum. Nature Communications. 8, 63. [PubMed]

  •    
  • Muthusamy, B., Selvan, L. D. N., Nguyen, T. T., Manoj, J., Stawiski, E. W., Jaiswal, B. S., Wang, W., Raja, R., Ramprasad, V. L., Gupta, R., Murugan, S., Kadandale, J. S., Prasad, T. S. K., Reddy, K., Peterson, A., Pandey, A., Seshagiri, S., Girimaji, S. C. and Gowda, H. (2017). Next generation sequencing reveals novel mutations in X-linked intellectual disability. OMICS: A Journal of Integrative Biology. 21, 295-303. [PubMed]

  •    
  • Verma, R., Pinto, S., Patil, A. H., Advani, J., Subba, P., Kumar, M., Sharma, J., Dey, G., Ravikumar, R., Buggi, S., Satishchandra, P., Sharma, K., Suar, M. T., Srikanth, C., Singh, D., Gowda, H., Pandey, A., Gandotra, S. and Prasad, T. S. K. (2017). Quantitative proteomic and phosphoproteomic analysis of H37Ra and H37Rv strains of Mycobacterium tuberculosis. Journal of Proteome Research. 16, 1632-1645. [PubMed]

  •  
  • Prasad, T. S. K*., Mohanty, A. K*., Kumar, M*., Sreenivasamurthy, S. K*., Dey, G*., Nirujogi, R. S., Pinto, S. M., Madugundu, A. K., Patil, A. H., Advani, J., Manda, S. S., Gupta, M. K., Dwivedi, S. B., Kelkar, D. S., Hall, B., Jiang, X., Peery, A., Rajagopalan, P., Yelamanchi, S. D., Solanki, H. S., Raja, R., Sathe, G. J., Chavan, S. N., Verma, R., Patel, K. M., Jain, A. P., Syed, N., Datta, K. K., Khan, A. A., Dammalli, M., Jayaram, S., Radhakrishnan, A., Mitchell, C. J., Na, C. H., Kumar, N., Sinnis, P., Sharakhov, I. V., Wang, C., Gowda, H., Tu, Z., Kumar, A. and Pandey, A. (2017). Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes. Genome Research. 27, 133-144. [PubMed] (*Contributed Equally)

  •    
  • Dammalli, M., Murthy, K. R., Pinto, S. M., Murthy, K. B., Nirujogi, R. S., Madugundu, A. K., Dey, G., Nair, B., Gowda, H. and Prasad, T. S. K. (2017). Towards post-genomics ophthalmology: A proteomic map of the human choroid-retinal pigment epithelium tissue. OMICS: A Journal of Integrative Biology. 2, 114-122. [PubMed]

  •    
  • Nirujogi, R. S., Muthusamy, B., Kim, M. S., Sathe, G. J., Lakshmi, P. T. V., Kovbasnjuk, O. N., Prasad, T. S. K., Wade, M. and Jabbour, R. E. (2017). Secretome analysis of diarrhea-inducing strains of Eschreichia coli. Proteomics. [PubMed]

  •    
  • Dhawan, R., Kumar, M., Mohanty, A. K., Dey, G., Advani, J., Prasad, T. S. K. and Kumar, A. (2017). Mosquito-borne diseases and Omics: salivary gland proteome of the female Aedes aegypti mosquito. OMICS: A Journal of Integrative Biology. 21, 45-54. [PubMed]

  •    
  • Guthikonda, P. K., Bharathan, S. P., Rayabaram, J., Sornapudi, T. R., Yellaboina, S. R., Velayudhan, S. R. and Kurukuti, S. (2017). Polymorphic dynamics of ribosomal proteins gene expression during somatic cell reprogramming and their differentiation into specialized cells-types. bioRxiv. [PubMed]

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    2016 (Number of publications - 15)

     
     
  • Mir, S. A., Pinto, S. M., Paul, S., Raja, R., Nanjappa, V., Syed, N., Advani, J., Renuse, S., ahasrabuddhe, N. A., Prasad, T. S. K., Giri, A. K., Gowda, H. and Chatterjee, A. (2016). SILAC-based quantitative proteomic analysis reveals widespread molecular alterations in human skin keratinocytes upon chronic arsenic exposure. Proteomics. [PubMed]

  •    
  • Radhakrishnan, A., Nanjappa, V., Raja, R., Sathe, G., Puttamallesh, V. N., Jain, A. P., Pinto, S. M., Balaji, S. A., Chavan, S., Sahasrabuddhe, N. A., Mathur, P. P., Kumar, M. M., Prasad, T. S. K., Santosh, V., Sukumar, G., Califano, J. A., Rangarajan, A., Sidransky, D., Pandey, A., Gowda, H. and Chatterjee, A. (2016). A dual specificity kinase, DYRK1A, as a potential therapeutic target for head and neck squamous cell carcinoma. Scientific Reports. 6, 36132. [PubMed]

  •    
  • Yelamanchi, S. D., Kumar, M., Madugundu, A., Gopalakrishnan, L., Dey, G., Chavan, S., Sathe, G., Mathur, P. P., Gowda, H., Mahadevan, A., Shankar, S. K., Prasad, T. S. K. (2016). Characterization of human pineal gland proteome. Molecular Biosystems. 12, 3622-3632. [PubMed]

  •    
  • Chatterjee, O., Patil, K., Sahu, A., Gopalakrishnan, L., Mol, P., Advani, J., Mukherjee, S., Christopher, R. and Prasad, T. S. K. (2016). An overview of the Oxytocin-Oxytocin receptor signaling network. Journal of Cell Communication and Signalling. 10, 355-360. [PubMed]

  •    
  • Raja, R., Sahasrabuddhe, N. A., Radhakrishnan, A., Syed, N., Solanki, H., Puttamallesh, V. N., Balaji, S. A., Nanjappa, V., Datta, K. K., Babu, N., Renuse, S. Patil, A. H, Izumchenko, E., Prasad, T. S. K., Chang, X., Rangarajan,A., Sidransky, D., Pandey, A., Gowda, H. and Chatterjee, A. (2016). Chronic exposure to cigarette smoke leads to activation of p21 (RAC1) - activated kinase 6 (PAK6) in non-small cell lung cancer cells. Oncotarget.7, 61229-61245 [PubMed]

  •    
  • Yelamanchi, S. D., Solanki, H. S., Radhakrishnan, A., Balakrishnan, L., Advani, J., Raja, R., Sahasrabuddhe, N. A., Mathur, P. P., Dutta, P., Prasad, T. S. K., Korbonits, M., Chatterjee, A., Gowda, H., Mukherjee, K. K. (2016). Signaling network map of aryl hydrocarbon receptor. Journal of Cell Communication and Signaling. 10, 341-346. [PubMed]

  •    
  • Murthy, K. R., Dammalli, M., Pinto, S. M., Murthy, K. B., Nirujogi, R. S., Madugundu A. K., Dey, G., Subbannayya, Y., Mishra, U.K., Nair, B., Gowda, H. and Prasad, T. S. K. (2016). A comprehensive proteomics analysis of the human iris tissue: Ready to embrace postgenomics precision medicine in ophthalmology? OMICS: A Journal of Integrative Biology. 9, 510-519. [PubMed]

  •    
  • Sathe, G. J*., Pinto, S. M*., Syed, N., Nanjappa, V., Solanki, H. S., Renuse, S., Chavan, S., Khan, A. A., Patil, A. H., Nirujogi, R. S., Nair, B., Mathur, P. P., Prasad, T. S. K., Gowda, H. and Chatterjee, A. (2016). Phosphotyrosine profiling of curcumin-induced signaling. Clinical Proteomics. 13, 13. [PubMed] (*The authors contributed equally)

  •    
  • Anand, A., Sharma, K., Sharma, S. K., Singh, R., Sharma, N. K. and Prasad, T. S. K. (2016). AMD genetics in India: The missing links. Frontiers in Aging Neuroscience. 8, 115. [PubMed]

  •    
  • Subbannayya, T., Variar, P., Advani, J., Nair, B., Shankar, S., Gowda, H., Saussez, S., Chatterjee, A. and Prasad, T. S. K. (2016). An integrated signal transduction network of macrophage migration inhibitory factor. Journal of Cell Communication and Signaling. 10, 165-170. [PubMed]

  •    
  • Barua, P., Subba, P., Lande, N.V., Mangalaparthi, K.K., Prasad, T. S. K., Chakraborty, S., Chakraborty, N. (2016). Gel based and gel-free search for plasma membrane proteins in chickpea (Cicer arietinum L.) augments the comprehensive data sets of membrane protein repertoire. Journal of Proteomics. 143, 199-208. [PubMed]

  •    
  • Sunitha, B., Gayathri, N., Kumar, M., Prasad, T. S. K., Nalini, A., Padmanabhan, B., and Bharath, M. M. S. (2016). Muscle biopsies from human neuromuscular diseases with myopathic pathology reveal common alterations in mitochondrial function. Journal of Neurochemistry. 138, 174-191. [PubMed]

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  • Datta, K. K., Patil, A. H., Patel, K., Dey, G., Madugundu, A. K., Renuse, S., Kaviyil, J. E., Nirujogi, R. S., Arunima, A., Daswani, B., Kaur, I., Mohanty, J., Sinha, R., Jaiswal, S., Sivapriya, S., Sonnathi, Y., Chattoo, B. B., Gowda, H., Ravikumar, R. and Prasad, T. S. K. (2016). Proteogenomics of Candida tropicalis - an opportunistic pathogen with importance for global health. OMICS: A Journal of Integrative Biology. 20, 239-247. [PubMed] 

  •    
  • Subbannayya, Y., Pinto, S. M., Gowda, H and Prasad, T. S. K. (2016). Proteogenomics for understanding oncology: Recent advances and future prospects. Expert Review Proteomics. 25, 1-12. [PubMed] 

  •    
  • Radhakrishnan, A., Nanjappa, V., Raja, R., Sathe, G. J., Chavan, S., Nirujogi, R. S., Patil, A., Solanki, H., Renuse, S., Sahasrabuddhe, N. A., Mathur, P. P., Prasad, T. S. K., Kumar, P., Califano, J. A., Sidransky, D., Pandey, A., Gowda, H. and Chatterjee, A. (2016). Dysregulation of splicing proteins in head and neck squamous cell carcinoma. Cancer Biology and Therapy. 17, 219-229. [PubMed] 

  •    
    2015 (Number of publications - 5)

       
  • Yelamanchi, S. D., Jayaram, S., Thomas, J. K., Gundimeda, S., Khan, A. A., Singhal, A., Prasad, T. S. K., Pandey, A., Somani, B. L. and Gowda, H. (2015). A pathway map of glutamate metabolism. Journal of Cell Communication and Signaling. 10, 69-75. [PubMed] 

  •    
  • Subbannayya, T., Leal-Rojas, P., Barbhuiya, M., Raja, R., Renuse, S., Sathe, G., Pinto, S. M., Syed, N., Nanjappa, V., Patil, A. H., Garcia, P., Sahashrabuddhe, N. A., Nair, B., Guerrero-Preston, R., Navani, S., Tiwari, P. K., Santosh, V., Sidransky, D., Prasad, T. S. K., Gowda, H., Roa, J. C., Pandey, A. and Chatterjee, A. (2015) Macrophage migration inhibitory factor – a therapeutic target in gallbladder cancer. BMC Cancer. 15, 843. [PubMed] 

  •    
  • Nanjappa, V., Renuse, S., Sathe, G. J., Raja, R., Syed, N., Radhakrishnan, A., Subbannayya, T., Patil, A., Marimuthu, A., Sahasrabuddhe, N. A., Guerrero-Preston, R., Somani, B. L., Nair, B., Kundu, G. C., Prasad, T. S. K., Califano, J. A., Gowda, H., Sidransky, D., Pandey, A. and Chatterjee, A. (2015). Chronic exposure to chewing tobacco selects for overexpression of stearoyl-CoA desaturase in normal oral keratinocytes. Cancer Biology and Therapy. 16, 1593-603. [PubMed] 

  •    
  • Verma, R., Balakrishnan, L., Sharma. K., Khan A. A., Advani, J., Gowda, H., Tripathy, S.P., Suar, M., Pandey, A., Gandotra, S., Prasad, T. S. K., Subramanian, S. (2015). A network map of Interleukin-10 signaling pathway. Journal of Cell Communication and Signaling. 10, 61-67. [PubMed] 

  •    
  • Selvan, L. D. N., Sreenivasamurthy, S. K., Kumar, S., Yelamanchi, S. D., Madugundu, A. K., Anil, A. K., Renuse, S., Nair, B. G., Gowda, H., Mathur, P. P, Satishchandra, P., Shankar S. K., Mahadevan, A. and Prasad, T. S. K. (2015). Characterization of host response to Cryptococcus neoformans through quantitative proteomic analysis of cryptococcal meningitis co-infected with HIV. Molecular BioSystems. 11, 2529-2540. [PubMed] 

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