Workshop: Intensive Hands on Workshop on Human Genome and Transcriptome Data Analysis        

Date: 27 - 30 March, 2017

Timings: 9:00 AM onwards

Venue: YU-IOB Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya University


Schedule


Workshop Program

Day 1:

Tutorial Lectures

  • NextGen sequencing platforms
  • Sequencing data formats
  • Quality control of raw data
  • Introduction to Nanopore sequencing
  • Day 2:

    Tutorial Lectures

  • Mapping algorithms and tools for whole genome and exome data
  • Variant analysis from genome data
  • Day 3:

    Tutorial Lectures

  • Variant analysis tools

  • Day 4:

    Tutorial Lectures

  • Expression analysis of transcriptome

  • Hands on training

  • Linux environment and data formats
  • Public data and annotation resources
  • Hands on training

  • Demonstration of Nanopore sequencing
  • Quality filteration and visualization tools
  • Genome alignment and analysis tools
  • Hands on training

  • Variant identification and annotation methods
  • Differential expression analysis
  • Introduction to R and genome analysis packages
  • Hands on training

  • Differential expression analysis
  • Introduction to R and genome analysis packages